Re: [Seqan-dev] SAM issue?

[Mat <matthias.dodt@mdc-berlin.de>]

Hi Manuel!

Thanks a lot for all the advices - now it works! Great- If i may propose:

I couldn't find any information on the functions you used in the developer-doc's so i think it would be nice to mention in the documentation that:
- alignedReadStore's beginPos/endPos return gap space coordinates
- document the undocumented functions contigGaps() and positionGapToSeq()
- point out the differences if contig sequences are not available...

Thanks again for the excellent support!

All the best!

Mat