Re: [Seqan-dev] SeqAn Restructuring Done

["Reinert, Knut" <Knut.Reinert@fu-berlin.de>]

Hallo Fabian,

Ich habe auch solche Probleme. Wir werden da mal reinschauen.

Knut 

Sent from my iPad

On May 8, 2011, at 9:35 PM, "Fabian Buske" <f.buske@uq.edu.au> wrote:

> Hi,
> 
> I like the new structure of seqan.
> Below are, however, a couple of things I notices on Macs (with Xcode).
> 
> 1.) When following the tutorial for "getting started" and jumping right 
> to the Mac section and following from there I noticed that the 
> "forwards" are not generated when opening the sandbox and trying to 
> compile the example resulting in plenty of compiler errors.
> 
> # mkdir Debug
> # cd Debug
> # cmake ../.. -DCMAKE_BUILD_TYPE=Debug -G "Xcode"
> # open sandbox/my_sandbox/seqan_sandbox_my_sandbox.xcodeproj
> or
> # open core/demos/seqan_core_demos.xcodeproj
> 
> Opening the overall project build/Debug/seqan.xcodeproj and compiling 
> anything at all first seems to be a workaround to get the "forwards" 
> generated.
> 
> 2.) Running the cmake command after populating the app folder does not 
> seem to pick up additional header files in an app.
> cmake ../.. -DCMAKE_BUILD_TYPE=Debug -G "Xcode"
> 
> 3.) The same seems to be true for the sandbox tests. Here neither header 
> nor cpp files dropped into the sandbox/test/testapp-folder are picked up 
> by cmake.
> 
> Best,
> Fabian
> 
> 
> On 8/04/11 2:37 AM, Holtgrewe, Manuel wrote:
>> Dear all,
>> 
>> we have completed the restructuring and there should be no major glitches left. We moved the files, updated the source code, tutorial and documentation. Please report any problems with the update to the mailing list or in a ticket. If you have any further questions we would be more than happy to answer them!
>> 
>> In order to circumvent problems, we recommend you to perform a clean checkout of SeqAn:
>> 
>>   svn co http://svn.mi.fu-berlin.de/seqan/trunk/seqan seqan-trunk
>> 
>> The following should work then (assuming you are using Makefiles on Linux/Os X):
>> 
>>   $ mkdir build/Debug
>>   $ cd build/Debug
>>   $ cmake ../..
>>   $ make test_basic
>>   $ ./core/tests/test_basic/test_basic
>>   ... the basic test will run ...
>> 
>> We are sorry for any caused inconvenience.
>> 
>> Kind Regards,
>> The SeqAn Development Team
>> _______________________________________________
>> seqan-dev mailing list
>> seqan-dev@lists.fu-berlin.de
>> https://lists.fu-berlin.de/listinfo/seqan-dev
> 
> 
> -- 
> Fabian Buske
> Institute for Molecular Bioscience
> The University of Queensland
> Brisbane, Qld. 4072 Australia
> Phone: (61)-(7)-334-62641
> 
> 
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