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Re: [Seqan-dev] RecordReader question

<-- thread -->
<-- date -->
  • From: Manuel Holtgrewe <manuel.holtgrewe@fu-berlin.de>
  • To: SeqAn Development <seqan-dev@lists.fu-berlin.de>
  • Date: Tue, 22 Nov 2011 11:08:28 +0100
  • Reply-to: SeqAn Development <seqan-dev@lists.fu-berlin.de>
  • Subject: Re: [Seqan-dev] RecordReader question

Ray,

there are no silly questions ;) Apparently, you have been confused by the SVN structure. This is a point we will address in the near future with a reorganization.

You are looking for the stream.h header in the "extras" library.

http://svn.mi.fu-berlin.de/seqan/trunk/seqan/extras/include/seqan/

The stream library is included in the current trunk revision.

Apparently, you are using your own build/project files, i.e. not generated with the SeqAn build system. Note that you have to add both "core/include" and "extras/include" to the include path.

HTH and don't hesitate to ask more questions.
Manuel

On 11/22/2011 11:04 AM, Raymond Wan wrote:

Dear all,

Sorry if this is a silly question, but I'm trying to get the
RecordReader example at:

http://trac.mi.fu-berlin.de/seqan/browser/trunk/seqan/extras/demos/tutorial/stream/stream_read_record_fasta.cpp

working but have been unsuccessful.  In particular, it can't
seem to find<seqan/stream.h>.  In fact, I can't seem to
find it myself -- it seems to exist in seqan/file/stream.h.
   However, I did a simple grep through this and other files
in the archive and can't find RecordReader mentioned anywhere...

I'm using version 1.3 but also took a look at the Subversion
repository and can't find it either.

I guess I must be doing something wrong...  Any help would
be appreciated; thank you!  Is it related to the "beta
state" message at the top of one of the Tutorial pages?

Thank you!

Ray




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  • Follow-Ups:
    • Re: [Seqan-dev] RecordReader question
      • From: Raymond Wan <rwan@cuhk.edu.hk>
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    • [Seqan-dev] RecordReader question
      • From: Raymond Wan <rwan@cuhk.edu.hk>
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