Re: [Seqan-dev] RecordReader question

[Raymond Wan <rwan@cuhk.edu.hk>]

Hi Manuel,

Thank you for the prompt reply!


On 2011-11-22 18:08, Manuel Holtgrewe wrote:
> there are no silly questions ;) Apparently, you have been confused by
> the SVN structure. This is a point we will address in the near future
> with a reorganization.
>
> You are looking for the stream.h header in the "extras" library.
>
> http://svn.mi.fu-berlin.de/seqan/trunk/seqan/extras/include/seqan/
>
> The stream library is included in the current trunk revision.


Ah, I see!  So, RecordReader isn't part of the current 
version of SeqAn?

I see.  I didn't realize my clicking through the 
documentation took me from version 1.3 to the extras.

Will the extras be moved in with everything else later on? 
i.e., extras is for "upcoming features"?

And yes, I didn't realize there was even an extras/ 
subdirectory...


> Apparently, you are using your own build/project files, i.e. not
> generated with the SeqAn build system. Note that you have to add both
> "core/include" and "extras/include" to the include path.


Ah, yes.  I'm adding SeqAn to my CMakeLists.txt rather than 
adding my project to SeqAn's CMakeLists.txt.  I figured if I 
start off with an empty file, then I have an idea of what 
goes inside it.  SeqAn's looks great but there are a lot of 
cmake directives I don't quite understand.

As I started off with the 1.3 release, I didn't realize 
there were two include paths.  I guess you recommend going 
with the SVN trunk rather than the older 1.3 release?


> HTH and don't hesitate to ask more questions.


Ok!  :-) and thank you for your help!

Ray