Re: [Seqan-dev] obtain consensus sequence

[Manuel Holtgrewe <manuel.holtgrewe@fu-berlin.de>]

Dear Erik,

the consensus module in its current version will not help you. What  
you have to do is first to compute the profiles for each cluster of  
sequences in your MSA. Then, you can comput the consensus from that.

Appended is a header with functions to do just that. Code with similar  
functionality will be part of a future version of SeqAn.

Don't hesitate to send questions, proposals for improvements etc.

HTH,
Manuel

Attachment: consensus_calling.h
Description: Binary data