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[Seqan-dev] about extendSeed of Seqan

<-- thread -->
<-- date -->
  • From: Beifang Niu <neilniu.cn@gmail.com>
  • To: seqan-dev@lists.fu-berlin.de
  • Date: Mon, 24 Oct 2011 14:50:33 -0700
  • Reply-to: SeqAn Development <seqan-dev@lists.fu-berlin.de>
  • Subject: [Seqan-dev] about extendSeed of Seqan

Hi,

I am trying to use Seqan library to do the MEM (max exact match) extension.
Firstly, I get the MEM of the two genome sequences using MUMMER3 and then I want to use extendSeed of Seqan to do extension of MEMs.
Is there any examples for extendSeed function of seeds class? 

thanks,
Beifang.
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    • Re: [Seqan-dev] about extendSeed of Seqan
      • From: "Kehr, Birte" <Birte.Kehr@fu-berlin.de>
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