[Seqan-dev] bgzf question


Hi,

I would like to ask our sysadmins to install the bgzf libraries necessary for reading the bam files. could you please let me know how the libraries are called? I am working on a Linux/Redhat 64 bit machine.

the reason why I believe we don't have that library is because I see the following error messages during linking:

/pasteur/solexa2/solexa_travail/PF2/programs/seqan/seqsan-svn/extras/include/seqan/ext_lh3/bgzf-impl.h:316: undefined reference to `deflateInit2_'

and may more of this kind...

Thanks for your kind help,

Bernd