Re: [Seqan-dev] bgzf question

["Holtgrewe, Manuel" <manuel.holtgrewe@fu-berlin.de>]

Bernd,

the bgzf libraries are included with SeqAn. The only thing you need is zlib.

On some Linux systems, you need the "developer version" which includes the headers. Check if /usr/include/zlib.h already exists. If this is the case (99% of all Linux installations will feature this) then you should be good to go already.

Bests,
Manuel

Am 15.09.2011 um 14:38 schrieb Bernd Jagla:

> Hi,
> 
> I would like to ask our sysadmins to install the bgzf libraries 
> necessary for reading the bam files.
> could you please let me know how the libraries are called? I am working 
> on a Linux/Redhat 64 bit machine.
> 
> the reason why I believe we don't have that library is because I see the 
> following error messages during linking:
> 
> /pasteur/solexa2/solexa_travail/PF2/programs/seqan/seqsan-svn/extras/include/seqan/ext_lh3/bgzf-impl.h:316: 
> undefined reference to `deflateInit2_'
> 
> and may more of this kind...
> 
> Thanks for your kind help,
> 
> Bernd
> 
> 
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