Re: [Seqan-dev] bgzf question
Bernd,
the bgzf libraries are included with SeqAn. The only thing you need is zlib.
On some Linux systems, you need the "developer version" which includes the headers. Check if /usr/include/zlib.h already exists. If this is the case (99% of all Linux installations will feature this) then you should be good to go already.
Bests,
Manuel
Am 15.09.2011 um 14:38 schrieb Bernd Jagla:
> Hi,
>
> I would like to ask our sysadmins to install the bgzf libraries
> necessary for reading the bam files.
> could you please let me know how the libraries are called? I am working
> on a Linux/Redhat 64 bit machine.
>
> the reason why I believe we don't have that library is because I see the
> following error messages during linking:
>
> /pasteur/solexa2/solexa_travail/PF2/programs/seqan/seqsan-svn/extras/include/seqan/ext_lh3/bgzf-impl.h:316:
> undefined reference to `deflateInit2_'
>
> and may more of this kind...
>
> Thanks for your kind help,
>
> Bernd
>
>
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