[Seqan-dev] Some SeqAn problems

[José Iguelmar Miranda <jose.ig.miranda@gmail.com>]

Hi:

First and foremost, my best congratulations for this wonderful C++ library. SeqAn is an awesome contribution to sequence analysis. You guys are great!

I installed SeqAn in my MBP-intel using MacPorts. Almost everything runs smooth. But I am stuck with some problems:

1. In the tutorial PairwiseSequenceAlignment I got problems with the use of LocalAlignmentEnumerator, Banded alignment (two last parms values) and globalAlignmentScore. The compiler error msg is "xxx was not declared in this scope." Indeed, I double checked the headers and the ones corresponding to these statements aren't available in the includes (/opt/local/include/seqan/).

2. The same happens with FMIndex (was not declared in this scope).

3. In the graph tutorial, the same happens with assignVertexMap (was not declared in this scope).

Searching your sources, I could find the headers for these statements. Would it be a problem with the MacPorts installation?

Best regards.

Jose I Miranda.