Re: [Seqan-dev] Disk-based index
- From: "Siragusa, Enrico" <Enrico.Siragusa@fu-berlin.de>
- To: SeqAn Development <seqan-dev@lists.fu-berlin.de>
- Date: Wed, 28 Aug 2013 11:46:28 +0200
- Reply-to: SeqAn Development <seqan-dev@lists.fu-berlin.de>
- Subject: Re: [Seqan-dev] Disk-based index
Hi John,
On Aug 28, 2013, at 10:54 AM, John Reid <j.reid@mail.cryst.bbk.ac.uk>
wrote:
Sure. To save an index after constructing it, you can call save(index, "/path/to/index"). To load it, call open(index, "/path/to/index"). The path must be given as a C style string, so if you're using a SeqAn String, please use toCString() to convert it.
We had some thoughts on parallel suffix array construction as well as parallel direct bwt construction. However, ERA is a suffix tree construction algorithm, so it wouldn't be useful to construct enhanced suffix arrays directly.
Enrico
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- References:
- [Seqan-dev] Disk-based index
- From: John Reid <j.reid@mail.cryst.bbk.ac.uk>
- [Seqan-dev] Disk-based index
-
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