[Seqan-dev] question about the efficiency of the sequan sequence classes

[Bartha Dániel <daniel.bartha@gmail.com>]

Hi All,

i have a big queston there. I wrote an application, that currently uses my own custom std::string based implementation for some dna mutation stuff. I basically have to access every simple character in the dna, and then do something with them, but that is not important for the question.

I tend to rewrite the whole app with seqan, but it only has sense, if the manipulation and accessing of the seqan classes significant faster is, than my own. I read about the effectiveness in the Motivation chapter, but does anybody have any experience about the concrete yield of possible acceleration?

Thanks!

Regards: Daniel

Live long and prosper

Bartha Dániel
MTA-VMRI, 2013