Re: [Seqan-dev] razers3 "failed for left reads in thread"

[Nomi Meixner <nomi.meixner@student.uni-tuebingen.de>]

Dear Manuel,

thank you very much for your helpful reply!

> In the meantime, you could try to use "-tc 0" which uses the non-parallel code path instead of the parallel one (-tc 1 would call the parallel code path with one thread).

The run with -tc 0 completed without errors. Further investigations from 
my bio-informatics colleague found out that our input files maybe were 
not too well-suited for the task.

As our main goal was to test that the installation was successful and 
everything is fine for the end users, we tried running RazerS on the 
ecoli data from your paper. It completed without errors. The content of 
the resulting sam file still needs to be investigated by my colleague.

For now, we assume, that everything is fine.

Again, thank you for all your helpful hints.

Best,
Nomi