[Seqan-dev] problem compiling

[Bernd Jagla <bernd.jagla@pasteur.fr>]

Hi,

I have just updated from SVN and get the following error message:

[  5%] Building CXX object 
core/demos/CMakeFiles/demo_align_global_alignment_banded.dir/align/global_alignment_banded.cpp.o
/pasteur/projets/specific/PF2_ngs/protected/programs/seqan/seqan-trunk/core/demos/align/global_alignment_banded.cpp:3:24: 
error: seqan/base.h: No such file or directory
/pasteur/projets/specific/PF2_ngs/protected/programs/seqan/seqan-trunk/core/demos/align/global_alignment_banded.cpp: 
In function 'int main()':
/pasteur/projets/specific/PF2_ngs/protected/programs/seqan/seqan-trunk/core/demos/align/global_alignment_banded.cpp:12: 
error: 'Dna5String' was not declared in this scope
/pasteur/projets/specific/PF2_ngs/protected/programs/seqan/seqan-trunk/core/demos/align/global_alignment_banded.cpp:12: 
error: template argument 1 is invalid
/pasteur/projets/specific/PF2_ngs/protected/programs/seqan/seqan-trunk/core/demos/align/global_alignment_banded.cpp:12: 
error: invalid type in declaration before ';' toke
n
/pasteur/projets/specific/PF2_ngs/protected/programs/seqan/seqan-trunk/core/demos/align/global_alignment_banded.cpp:13: 
error: 'rows' was not declared in this scope
/pasteur/projets/specific/PF2_ngs/protected/programs/seqan/seqan-trunk/core/demos/align/global_alignment_banded.cpp:13: 
error: 'resize' was not declared in this scope
/pasteur/projets/specific/PF2_ngs/protected/programs/seqan/seqan-trunk/core/demos/align/global_alignment_banded.cpp:14: 
error: 'row' was not declared in this scope
/pasteur/projets/specific/PF2_ngs/protected/programs/seqan/seqan-trunk/core/demos/align/global_alignment_banded.cpp:23: 
error: no matching function for call to 'globalAli
gnment(int&, seqan::Score<int, seqan::Tag<seqan::Simple_> >&, 
seqan::AlignConfig<false, false, false, false, 
seqan::Tag<seqan::Default_> >&, int&, int&)'
make[2]: *** 
[core/demos/CMakeFiles/demo_align_global_alignment_banded.dir/align/global_alignment_banded.cpp.o] 
Error 1
make[1]: *** 
[core/demos/CMakeFiles/demo_align_global_alignment_banded.dir/all] Error 2
make: *** [all] Error 2

I have double checked that there no differences between the local and 
the remote system...

Thanks for your help.

Bernd