Re: [Seqan-dev] problem compiling

["Holtgrewe, Manuel" <manuel.holtgrewe@fu-berlin.de>]

Hi Bernd, this is the same problem as Nomi's.

Please update and try again.

Cheers,
Manuel
________________________________________
From: Bernd Jagla [bernd.jagla@pasteur.fr]
Sent: Tuesday, June 25, 2013 9:48 AM
To: seqan-dev@lists.fu-berlin.de
Subject: [Seqan-dev] problem compiling

Hi,

I have just updated from SVN and get the following error message:

[  5%] Building CXX object
core/demos/CMakeFiles/demo_align_global_alignment_banded.dir/align/global_alignment_banded.cpp.o
/pasteur/projets/specific/PF2_ngs/protected/programs/seqan/seqan-trunk/core/demos/align/global_alignment_banded.cpp:3:24:
error: seqan/base.h: No such file or directory
/pasteur/projets/specific/PF2_ngs/protected/programs/seqan/seqan-trunk/core/demos/align/global_alignment_banded.cpp:
In function 'int main()':
/pasteur/projets/specific/PF2_ngs/protected/programs/seqan/seqan-trunk/core/demos/align/global_alignment_banded.cpp:12:
error: 'Dna5String' was not declared in this scope
/pasteur/projets/specific/PF2_ngs/protected/programs/seqan/seqan-trunk/core/demos/align/global_alignment_banded.cpp:12:
error: template argument 1 is invalid
/pasteur/projets/specific/PF2_ngs/protected/programs/seqan/seqan-trunk/core/demos/align/global_alignment_banded.cpp:12:
error: invalid type in declaration before ';' toke
n
/pasteur/projets/specific/PF2_ngs/protected/programs/seqan/seqan-trunk/core/demos/align/global_alignment_banded.cpp:13:
error: 'rows' was not declared in this scope
/pasteur/projets/specific/PF2_ngs/protected/programs/seqan/seqan-trunk/core/demos/align/global_alignment_banded.cpp:13:
error: 'resize' was not declared in this scope
/pasteur/projets/specific/PF2_ngs/protected/programs/seqan/seqan-trunk/core/demos/align/global_alignment_banded.cpp:14:
error: 'row' was not declared in this scope
/pasteur/projets/specific/PF2_ngs/protected/programs/seqan/seqan-trunk/core/demos/align/global_alignment_banded.cpp:23:
error: no matching function for call to 'globalAli
gnment(int&, seqan::Score<int, seqan::Tag<seqan::Simple_> >&,
seqan::AlignConfig<false, false, false, false,
seqan::Tag<seqan::Default_> >&, int&, int&)'
make[2]: ***
[core/demos/CMakeFiles/demo_align_global_alignment_banded.dir/align/global_alignment_banded.cpp.o]
Error 1
make[1]: ***
[core/demos/CMakeFiles/demo_align_global_alignment_banded.dir/all] Error 2
make: *** [all] Error 2

I have double checked that there no differences between the local and
the remote system...

Thanks for your help.

Bernd

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