1) Is there an easy way to get the accuracy of an Alignment object, or is that something I need to calculate myself?
2) bandedChainAlignment fails messily when given a Vector of Seeds instead of a String, where as other functions work fine (e.g. chainSeedsGlobally). Why does it work for the one and not the other? Excerpt from error message below.
/usr/include/seqan/seeds/banded_chain_alignment_impl.h:1195:57: error: call to 'end' is ambiguous