[Seqan-dev] RazerS 3 compilation issue

["Tran Ngoc Hieu (Dr)" <NHTran@ntu.edu.sg>]

Dear All,

 

I encountered the following errors when trying to compile RazerS 3 (everything was fine when I tried other tools such as Mason, Masai). Could anyone please help with some advice? Thank you very much!

 

$ make razers3

[  0%] Built target seqan_extras

[  0%] Built target seqan_core

 

[100%] Building CXX object extras/apps/razers3/CMakeFiles/razers3.dir/razers.cpp.o

/home/nhtran/SeqAn/seqan-trunk/core/include/seqan/basic/test_system.h:73: warning: âclass seqan::Testâ has virtual functions but non-virtual destructor

/home/nhtran/SeqAn/seqan-trunk/core/include/seqan/arg_parse/tool_doc.h:197: warning: âclass seqan::ToolDocPrinter_â has virtual functions but non-virtual destructor

/home/nhtran/SeqAn/seqan-trunk/core/include/seqan/arg_parse/tool_doc.h:210: warning: âclass seqan::ManToolDocPrinter_â has virtual functions but non-virtual destructor

/home/nhtran/SeqAn/seqan-trunk/core/include/seqan/arg_parse/tool_doc.h:223: warning: âclass seqan::HtmlToolDocPrinter_â has virtual functions but non-virtual destructor

/home/nhtran/SeqAn/seqan-trunk/core/include/seqan/arg_parse/tool_doc.h:318: warning: âclass seqan::TextToolDocPrinter_â has virtual functions but non-virtual destructor

 

/home/nhtran/SeqAn/seqan-trunk/extras/apps/razers3/razers_matepairs_parallel.h: In function âvoid seqan::initializeThreadLocalStoragesPaired(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = seqan::String<seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<void> >, seqan::FragmentStore<MyFragStoreConfig, seqan::FragmentStoreConfig<MyFragStoreConfig> >, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<void> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<void> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<void> >, seqan::InfixSegment>, seqan::Owner<seqan::Tag<seqan::Default_> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0u> >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0u> >, seqan::RazerSOptions<seqan::RazerSSpec<false, false> >, seqan::String<seqan::String<short unsigned int, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >, seqan::Alloc<void> >, TFragmentStore = seqan::FragmentStore<MyFragStoreConfig, seqan::FragmentStoreConfig<MyFragStoreConfig> >, TSplitters = seqan::String<unsigned int, seqan::Alloc<void> >, TShape = const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0u> >, TOptions = seqan::RazerSOptions<seqan::RazerSSpec<false, false> >]â:

 

/home/nhtran/SeqAn/seqan-trunk/extras/apps/razers3/razers_matepairs_parallel.h:338: internal compiler error: in single_succ_edge, at basic-block.h:620

Please submit a full bug report,

with preprocessed source if appropriate.

See <URL:http://bugzilla.redhat.com/bugzilla> for instructions.

Preprocessed source stored into /tmp/ccHRTako.out file, please attach this to your bugreport.

make[3]: *** [extras/apps/razers3/CMakeFiles/razers3.dir/razers.cpp.o] Error 1

make[2]: *** [extras/apps/razers3/CMakeFiles/razers3.dir/all] Error 2

make[1]: *** [extras/apps/razers3/CMakeFiles/razers3.dir/rule] Error 2

make: *** [razers3] Error 2

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