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[Seqan-dev] building BWT error

<-- thread -->
<-- date -->
  • From: Y Z <zhaoyanswill@gmail.com>
  • To: seqan-dev@lists.fu-berlin.de
  • Date: Sun, 19 Apr 2015 23:16:59 -0400
  • Reply-to: SeqAn Development <seqan-dev@lists.fu-berlin.de>
  • Subject: [Seqan-dev] building BWT error

Dear whom may concern,

I followed the Mini Botie tutorial to build a BWT index for human genome reference (hg38).
TIndex fmIndex(text);
TIter it(fmIndex);
search(it, fragStore.readSeqStore);
save(fmIndex, ...);

However, after about 570 minutes, the program crashed with the message:
Asynchronous I/O operation failed (waitFor with timeOut=0ms) "Success"
fildes: 4
".../include/seqan/file/file_page.h:842 FAILED! (writing operation could not be completed: "Success")

Could you give me some suggestions about the error? The time building the index is much longer than what I expected. Is there anything wrong in my code? Thanks a lot!

--
Sincerely,
Yongan



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    • Re: [Seqan-dev] building BWT error
      • From: Hannes Hauswedell <hannes.hauswedell@fu-berlin.de>
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