Re: [Seqan-dev] building BWT error

[Hannes Hauswedell <hannes.hauswedell@fu-berlin.de>]

Am Sonntag, 19. April 2015, 23:16:59 schrieb Y Z:
> Dear whom may concern,
> 
> I followed the Mini Botie tutorial to build a BWT index for human genome
> reference (hg38).
> TIndex fmIndex(text);
> TIter it(fmIndex);
> search(it, fragStore.readSeqStore);
> save(fmIndex, ...);
> 
> However, after about 570 minutes, the program crashed with the message:
> Asynchronous I/O operation failed (waitFor with timeOut=0ms) "Success"
> fildes: 4
> ".../include/seqan/file/file_page.h:842 FAILED! (writing operation could
> not be completed: "Success")

This is an indicator for you running out of space in your temporary directory. 
You can change your temporary directory by setting the TMPDIR environment 
variable!

Hope that helps,
-- 
Hannes Hauswedell

PhD student
Max Planck Institute for Molecular Genetics / Freie Universität Berlin

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