Re: [Seqan-dev] Seqan Suffix array creation and search
- From: Alexander Vowinkel <vowinkel.alexander@gmail.com>
- To: SeqAn Development <seqan-dev@lists.fu-berlin.de>
- Date: Wed, 3 Jun 2015 12:48:59 -0500
- Reply-to: SeqAn Development <seqan-dev@lists.fu-berlin.de>
- Subject: Re: [Seqan-dev] Seqan Suffix array creation and search
Hi,
did you read the Tutorial [1]?
In [2] it is shown how to search in an Index and how to store an Index on HDD.
Best,
Alexander
2015-06-03 12:07 GMT-05:00 Yue Gan <gany.fml@gmail.com>:
I'm new to Seqan and trying to create the suffix array from a large fa file (~500MB) and search for a particular pattern. I am using the "Index<Dna5String>" to create an index and "Finder" to create a finder based on that index, am I doing right? Also, if I would like to store the suffix array to hard disk what should I do?Thanks!
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- [Seqan-dev] Seqan Suffix array creation and search
- From: Yue Gan <gany.fml@gmail.com>
- [Seqan-dev] Seqan Suffix array creation and search
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