Re: [Seqan-dev] Seqan Suffix array creation and search

[Alexander Vowinkel <vowinkel.alexander@gmail.com>]

Hi,

did you read the Tutorial [1]?

In [2] it is shown how to search in an Index and how to store an Index on HDD.

Best,

Alexander

[1] http://seqan.readthedocs.org/en/develop/Tutorial.html

[2] http://seqan.readthedocs.org/en/develop/Tutorial/Indices.html

2015-06-03 12:07 GMT-05:00 Yue Gan <gany.fml@gmail.com>:

I'm new to Seqan and trying to create the suffix array from a large fa file (~500MB) and search for a particular pattern. I am using the "Index<Dna5String>" to create an index and "Finder" to create a finder based on that index, am I doing right? Also, if I would like to store the suffix array to hard disk what should I do? 

Thanks!

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