[Seqan-dev] Seqan Suffix array creation and search

From: Yue Gan <gany.fml@gmail.com>
To: seqan-dev@lists.fu-berlin.de
Date: Wed, 3 Jun 2015 12:07:06 -0500
Reply-to: SeqAn Development <seqan-dev@lists.fu-berlin.de>
Subject: [Seqan-dev] Seqan Suffix array creation and search

I'm new to Seqan and trying to create the suffix array from a large fa file (~500MB) and search for a particular pattern. I am using the "Index<Dna5String>" to create an index and "Finder" to create a finder based on that index, am I doing right? Also, if I would like to store the suffix array to hard disk what should I do?

Thanks!

<-- thread -->

<-- date -->

Follow-Ups:
- Re: [Seqan-dev] Seqan Suffix array creation and search
  - From: Alexander Vowinkel <vowinkel.alexander@gmail.com>

seqan-dev - June 2015 - Archives indexes sorted by:
[ thread ] [ subject ] [ author ] [ date ]
Complete archive of the seqan-dev mailing list
More info on this list...