Re: [Seqan-dev] Downloading a specific Razers3 version

[Enrico Siragusa <enrico.siragusa@gmail.com>]

Hi Leonid,

Yara is going to be much faster than RazerS. As far as I know, Yara works well with OptiType, but you might want to ask the author of OptiType for a confirmation.

Enrico

On Feb 22, 2016, at 5:16 PM, Leonid Rozenberg <leonidr@gmail.com> wrote:

Hello Hannes,

I'm trying to use https://github.com/FRED-2/OptiType [1] and was hoping to fix one of the dependencies.

I guess I can use the CMakeList changes to back out a precise commit, but I think I'll roll the dice and

work with the latest version.

Thanks for your work,

Leonid

1: https://github.com/FRED-2/OptiType

On Mon, Feb 22, 2016 at 6:31 AM, Hannes Hauswedell <hannes.hauswedell@fu-berlin.de> wrote:

Am Freitag, 19. Februar 2016, 18:09:27 schrieb Leonid Rozenberg:
> Is there a way that I can build a specific Razers3 version from source?
> I couldn't find the necessary tag's in the github repo, are there maybe
> specific commits that correspond?

Why do you need old versions of RazerS?

There are no tags for apps in general (with the exception of Yara). Most apps
are also in "maintainance mode" which mean that we make sure they work with
new versions of SeqAn -- and also profit from fixed bugs in SeqAn -- but they
do not receive new features. Hence the increased version number only refers to
library updates. You can see how this changed (and at which commits) here:
https://github.com/seqan/seqan/commits/master/apps/razers3/CMakeLists.txt

In general we now also recommend our Yara read mapper over RazerS....

Best regards,
Hannes
--
Hannes Hauswedell

PhD student
Max Planck Institute for Molecular Genetics / Freie Universität Berlin

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