[Seqan-dev] Amino acid alphabet and scoring matrices: discrepancy with the doc and typo
- From: Simon Marillet <simon.marillet@inria.fr>
- To: seqan-dev@lists.fu-berlin.de
- Date: Tue, 29 Mar 2016 17:31:55 +0200
- Reply-to: SeqAn Development <seqan-dev@lists.fu-berlin.de>
- Subject: [Seqan-dev] Amino acid alphabet and scoring matrices: discrepancy with the doc and typo
Dear Seqan devs,I would like to mention the two following fact to you but I am not sure they really qualify for a bug report: -- First, the amino-acid alphabet size as in the documentation for seqan 2.0 is 27 ("The ValueSize of AminoAcid is 27"), whereas it is 26 in /basic/alphabet_residue.h The reason is that "O" is mentioned in the doc but not included in the source code. -- Second, among the matrices (of size 26x26) in score/score_matrix_data.h, matrix Pam250 has an extra coma at the end of the last row which is likely to trigger a compile error.
Best regards, Simon
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- From: Rahn, René <rene.maerker@fu-berlin.de>
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