FU Logo
  • Startseite
  • Kontakt
  • Impressum
  • Home
  • Listenauswahl
  • Anleitungen

[Seqan-dev] Amino acid alphabet and scoring matrices: discrepancy with the doc and typo

<-- thread -->
<-- date -->
  • From: Simon Marillet <simon.marillet@inria.fr>
  • To: seqan-dev@lists.fu-berlin.de
  • Date: Tue, 29 Mar 2016 17:31:55 +0200
  • Reply-to: SeqAn Development <seqan-dev@lists.fu-berlin.de>
  • Subject: [Seqan-dev] Amino acid alphabet and scoring matrices: discrepancy with the doc and typo

Dear Seqan devs,

I would like to mention the two following fact to you but I am not sure they really qualify for a bug report: -- First, the amino-acid alphabet size as in the documentation for seqan 2.0 is 27 ("The ValueSize of AminoAcid is 27"), whereas it is 26 in /basic/alphabet_residue.h The reason is that "O" is mentioned in the doc but not included in the source code. -- Second, among the matrices (of size 26x26) in score/score_matrix_data.h, matrix Pam250 has an extra coma at the end of the last row which is likely to trigger a compile error.

Best regards,

Simon



<-- thread -->
<-- date -->
  • Follow-Ups:
    • Re: [Seqan-dev] Amino acid alphabet and scoring matrices: discrepancy with the doc and typo
      • From: Rahn, René <rene.maerker@fu-berlin.de>
  • seqan-dev - March 2016 - Archives indexes sorted by:
    [ thread ] [ subject ] [ author ] [ date ]
  • Complete archive of the seqan-dev mailing list
  • More info on this list...

Hilfe

  • FAQ
  • Dienstbeschreibung
  • ZEDAT Beratung
  • postmaster@lists.fu-berlin.de

Service-Navigation

  • Startseite
  • Listenauswahl

Einrichtung Mailingliste

  • ZEDAT-Portal
  • Mailinglisten Portal