Re: [Seqan-dev] Amino acid alphabet and scoring matrices: discrepancy with the doc and typo

[Rahn, René <rene.maerker@fu-berlin.de>]

Hi  Simon,

thanks for finding this. Could you please open a new issue on https://github.com/seqan/seqan/issues.

We will then assign the bug and fix it.

Thanks a lot,

René Rahn

On 29 Mar 2016, at 17:31, Simon Marillet <simon.marillet@inria.fr> wrote:

Dear Seqan devs,

I would like to mention the two following fact to you but I am not sure they really qualify for a bug report:
-- First, the amino-acid alphabet size as in the documentation for seqan 2.0 is 27 ("The ValueSize of AminoAcid is 27"), whereas it is 26 in /basic/alphabet_residue.h
  The reason is that "O" is mentioned in the doc but not included in the source code.
-- Second, among the matrices (of size 26x26) in score/score_matrix_data.h, matrix Pam250 has an extra coma at the end of the last row which is likely to trigger a compile error.

Best regards,

Simon

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René Rahn

Ph.D. Student

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Mail: rene.rahn@fu-berlin.de

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