FU Logo
  • Startseite
  • Kontakt
  • Impressum
  • Home
  • Listenauswahl
  • Anleitungen

[Seqan-dev] installing Mason

thread -->
date -->
  • From: "Elizabeth Yuu" <yuue@zedat.fu-berlin.de>
  • To: seqan-dev@lists.fu-berlin.de
  • Date: Fri, 13 Sep 2019 16:43:31 +0200
  • Subject: [Seqan-dev] installing Mason

To whom this may concern,

I'm a PhD student at the Robert Koch Institute and I am trying to simulate
reads using Mason. I have downloaded the .zip file and I see that I must
apply the following steps svn co
http://svn.mi.fu-berlin.de/seqan/trunk/seqan seqan-trunk cd
seqan-trunk/build
    mkdir Release
    cd Release
    cmake -DCMAKE_BUILD_TYPE=Release ..
    make mason
./core/apps/mason/mason --help

I also tried using the link
http://trac.mi.fu-berlin.de/seqan/wiki/Tutorial/GettingStarted

I cannot access either of the two links. Is there another way to install
mason/ a tutorial?

Second, I am trying to reproduce results of a paper and I see the paper
uses Mason in two ways to produce Illumina reads. For example, I see "
mason_simualtor --illumina -n 100 ...." and then in another part I see
"masson illumina -n 100 ..." . what is the difference between these two
commands?
Many thanks in advance.
Best,
Elizabeth



thread -->
date -->
  • Follow-Ups:
    • Re: [Seqan-dev] installing Mason
      • From: Rahn, René <Rene.Rahn@fu-berlin.de>
  • seqan-dev - September 2019 - Archives indexes sorted by:
    [ thread ] [ subject ] [ author ] [ date ]
  • Complete archive of the seqan-dev mailing list
  • More info on this list...

Hilfe

  • FAQ
  • Dienstbeschreibung
  • ZEDAT Beratung
  • postmaster@lists.fu-berlin.de

Service-Navigation

  • Startseite
  • Listenauswahl

Einrichtung Mailingliste

  • ZEDAT-Portal
  • Mailinglisten Portal