Re: [Seqan-dev] Time complexity of posGlobalize
- From: "Weese, David" <weese@campus.fu-berlin.de>
- To: SeqAn Development <seqan-dev@lists.fu-berlin.de>
- Date: Wed, 27 Jul 2011 22:35:16 +0200
- Acceptlanguage: de-DE
- Reply-to: SeqAn Development <seqan-dev@lists.fu-berlin.de>
- Subject: Re: [Seqan-dev] Time complexity of posGlobalize
Hi John, you will find an introduction to the two position types for multiple sequences in the tutorial: There is a link to the metafunction SAValue which can be overloaded to change the position type used by an index: The ESA index Index<TText, IndexEsa<> > as well as most of the subclasses that whose a TSpec argument is Foo<> (and not Foo) can be further specialized in the form Foo<MoreSpecial<> > and Foo<MoreSpecial<EvenMoreSpecial<> > > and so on. That leaves room for further enhancements or specializations like a custom SAValue. struct MyIndex; template <typename TText> struct SAValue<Index<TText, IndexEsa<MyIndex> > > { typedef Pair<unsigned, unsigned, BitCompressed<19,13> > Type; }; Would it have helped if that was a part of the tutorial? Or where would you search for that example? Regards, David
-- David Weese weese@inf.fu-berlin.de Freie Universität Berlin http://www.inf.fu-berlin.de/ Institut für Informatik Phone: +49 30 838 75246 Takustraße 9 Algorithmic Bioinformatics 14195 Berlin Room 021 Am 27.07.2011 um 14:19 schrieb John Reid:
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- From: John Reid <j.reid@mail.cryst.bbk.ac.uk>
- Re: [Seqan-dev] Time complexity of posGlobalize
- From: "Weese, David" <weese@campus.fu-berlin.de>
- Re: [Seqan-dev] Time complexity of posGlobalize
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- Re: [Seqan-dev] Time complexity of posGlobalize
- From: John Reid <j.reid@mail.cryst.bbk.ac.uk>
- [Seqan-dev] Time complexity of posGlobalize
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