FU Logo
  • Startseite
  • Kontakt
  • Impressum
  • Home
  • Listenauswahl
  • Anleitungen

[Seqan-dev] reading in fastq file with read not read2

<-- thread -->
<-- date -->
  • From: Bernd Jagla <bernd.jagla@pasteur.fr>
  • To: seqan-dev@lists.fu-berlin.de
  • Date: Mon, 26 Sep 2011 15:19:10 +0200
  • Reply-to: SeqAn Development <seqan-dev@lists.fu-berlin.de>
  • Subject: [Seqan-dev] reading in fastq file with read not read2

Hi,

I would like to read a fastQ file with a single pass record by record and not store the sequences in memory. I only found read2 sample, which reads everything into memory (I believe)....

Could you please enlighten me on how to do that or where to find more information about that?

Thanks,

Bernd




<-- thread -->
<-- date -->
  • Follow-Ups:
    • Re: [Seqan-dev] reading in fastq file with read not read2
      • From: "Holtgrewe, Manuel" <manuel.holtgrewe@fu-berlin.de>
  • seqan-dev - September 2011 - Archives indexes sorted by:
    [ thread ] [ subject ] [ author ] [ date ]
  • Complete archive of the seqan-dev mailing list
  • More info on this list...

Hilfe

  • FAQ
  • Dienstbeschreibung
  • ZEDAT Beratung
  • postmaster@lists.fu-berlin.de

Service-Navigation

  • Startseite
  • Listenauswahl

Einrichtung Mailingliste

  • ZEDAT-Portal
  • Mailinglisten Portal