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Re: [Seqan-dev] reading in fastq file with read not read2

<-- thread -->
<-- date -->
  • From: "Holtgrewe, Manuel" <manuel.holtgrewe@fu-berlin.de>
  • To: SeqAn Development <seqan-dev@lists.fu-berlin.de>
  • Date: Mon, 26 Sep 2011 15:32:30 +0200
  • Acceptlanguage: en-US, de-DE
  • Reply-to: SeqAn Development <seqan-dev@lists.fu-berlin.de>
  • Subject: Re: [Seqan-dev] reading in fastq file with read not read2

Bernd,

good catch! For some reason, the Record Reading API demo from the tutorial was overwritten with opening compressed files. I just fixed this and you can now find the example here:

http://trac.mi.fu-berlin.de/seqan/wiki/Tutorial/ReadingSequenceFiles#RecordReadingAPI

Thanks,
Manuel

Am 26.09.2011 um 15:19 schrieb Bernd Jagla:

> Hi,
> 
> I would like to read a fastQ file with a single pass record by record 
> and not store the sequences in memory.
> I only found read2 sample, which reads everything into memory (I 
> believe)....
> 
> Could you please enlighten me on how to do that or where to find more 
> information about that?
> 
> Thanks,
> 
> Bernd
> 
> 
> _______________________________________________
> seqan-dev mailing list
> seqan-dev@lists.fu-berlin.de
> https://lists.fu-berlin.de/listinfo/seqan-dev




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      • From: Bernd Jagla <bernd.jagla@pasteur.fr>
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