Re: [Seqan-dev] reading in fastq file with read not read2

["Holtgrewe, Manuel" <manuel.holtgrewe@fu-berlin.de>]

Try this one ;) I also updated the reference in the tutorial.

http://trac.mi.fu-berlin.de/seqan/browser/trunk/seqan/extras/demos/tutorial/stream/stream_read_record_fasta.cpp

Am 26.09.2011 um 15:54 schrieb Bernd Jagla:

> thanks,
> it seems that the corresponding file is also not there:
> http://trac.mi.fu-berlin.de/seqan/browser/trunk/seqan/extras/demos/tutorial/stream/stream_read_fasta.cpp
> 
> Thanks,
> 
> Bernd
> 
> On 9/26/2011 3:32 PM, Holtgrewe, Manuel wrote:
>> Bernd,
>> 
>> good catch! For some reason, the Record Reading API demo from the tutorial was overwritten with opening compressed files. I just fixed this and you can now find the example here:
>> 
>> http://trac.mi.fu-berlin.de/seqan/wiki/Tutorial/ReadingSequenceFiles#RecordReadingAPI
>> 
>> Thanks,
>> Manuel
>> 
>> Am 26.09.2011 um 15:19 schrieb Bernd Jagla:
>> 
>>> Hi,
>>> 
>>> I would like to read a fastQ file with a single pass record by record
>>> and not store the sequences in memory.
>>> I only found read2 sample, which reads everything into memory (I
>>> believe)....
>>> 
>>> Could you please enlighten me on how to do that or where to find more
>>> information about that?
>>> 
>>> Thanks,
>>> 
>>> Bernd
>>> 
>>> 
>>> _______________________________________________
>>> seqan-dev mailing list
>>> seqan-dev@lists.fu-berlin.de
>>> https://lists.fu-berlin.de/listinfo/seqan-dev
>> 
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>> 
> 
> 
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